Systems Biology using SimianQuant - Comparing with NumPy, SymPy and Octave March 12, 2019 Harshad Deo 7 minutes read The SimianQuant library provides a Fluent API on top of its symbolic engine to model and solve Initial Value Problems. This article demonstrates how it can be used to solve a reference problem in systems biology, the repressilator, and how the SimianQuant approach compares with alternatives like NumPy, SymPy and Octave.
Spire Issues - Algorithmic Differentiation March 8, 2019 Harshad Deo 3 minutes read Spire is a Scala library that implements number types and numeric abstractions. With close to 1500 stars on github (as of writing), it seems to be the library around which the community has coalesced for those applications. However there are issues with the implementation of specific datastructures.
Constructive Barriers January 20, 2019 Harshad Deo 2 minutes read Conventional approaches to team structure attempt to minimize the barriers within and among teams. The stated hypothesis is that fewer barriers increase the frequency with which ideas are shared, built upon, experimented and dropped, and that this leads to the global optimum. The unstated hypothesis is that the ideas shared would have been thought through and developed in terms of the broader context. This is clearly false, and unless the company institutes some sort of a barrier, it can get…